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export

Attributes

KIARA_METADATA = {'authors': [{'name': 'Markus Binsteiner', 'email': 'markus@frkl.io'}], 'description': 'Modules related to extracting components from network data.'} module-attribute

Classes

ExportNetworkDataModule

Bases: DataExportModule

Export network data items.

Source code in /opt/hostedtoolcache/Python/3.11.4/x64/lib/python3.11/site-packages/kiara_plugin/network_analysis/modules/export.py 
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class ExportNetworkDataModule(DataExportModule):
    """Export network data items."""

    _module_type_name = "export.network_data"

    def export__network_data__as__graphml_file(
        self, value: NetworkData, base_path: str, name: str
    ):
        """Export network data as graphml file."""

        import networkx as nx

        target_path = os.path.join(base_path, f"{name}.graphml")

        # TODO: can't just assume digraph
        graph: nx.Graph = value.as_networkx_graph(
            nx.DiGraph, incl_node_attributes=True, incl_edge_attributes=True
        )
        nx.write_graphml(graph, target_path)

        return {"files": target_path}

    def export__network_data__as__gexf_file(
        self, value: NetworkData, base_path: str, name: str
    ):
        """Export network data as gexf file."""

        import networkx as nx

        target_path = os.path.join(base_path, f"{name}.gexf")

        # TODO: can't just assume digraph
        graph: nx.Graph = value.as_networkx_graph(
            nx.DiGraph, incl_node_attributes=True, incl_edge_attributes=True
        )
        nx.write_gexf(graph, target_path)

        return {"files": target_path}

    def export__network_data__as__adjlist_file(
        self, value: NetworkData, base_path: str, name: str
    ):
        """Export network data as adjacency list file."""

        import networkx as nx

        target_path = os.path.join(base_path, f"{name}.adjlist")

        # TODO: can't just assume digraph
        graph: nx.Graph = value.as_networkx_graph(
            nx.DiGraph, incl_node_attributes=True, incl_edge_attributes=True
        )
        nx.write_adjlist(graph, target_path)

        return {"files": target_path}

    def export__network_data__as__multiline_adjlist_file(
        self, value: NetworkData, base_path: str, name: str
    ):
        """Export network data as multiline adjacency list file."""

        import networkx as nx

        target_path = os.path.join(base_path, f"{name}.adjlist_multiline")

        # TODO: can't just assume digraph
        graph: nx.Graph = value.as_networkx_graph(
            nx.DiGraph, incl_node_attributes=True, incl_edge_attributes=True
        )
        nx.write_multiline_adjlist(graph, target_path)

        return {"files": target_path}

    def export__network_data__as__edgelist_file(
        self, value: NetworkData, base_path: str, name: str
    ):
        """Export network data as edgelist file."""

        import networkx as nx

        target_path = os.path.join(base_path, f"{name}.edge_list")

        # TODO: can't just assume digraph
        graph: nx.Graph = value.as_networkx_graph(
            nx.DiGraph, incl_node_attributes=True, incl_edge_attributes=True
        )
        nx.write_edgelist(graph, target_path)

        return {"files": target_path}

    def export__network_data__as__network_text_file(
        self, value: NetworkData, base_path: str, name: str
    ):
        """Export network data as network text file (with a '.network' extension)."""

        import networkx as nx

        target_path = os.path.join(base_path, f"{name}.network")

        # TODO: can't just assume digraph
        graph: nx.Graph = value.as_networkx_graph(
            nx.DiGraph, incl_node_attributes=True, incl_edge_attributes=True
        )
        nx.write_network_text(graph, target_path)

        return {"files": target_path}

Functions

export__network_data__as__graphml_file(value: NetworkData, base_path: str, name: str)

Export network data as graphml file.

Source code in /opt/hostedtoolcache/Python/3.11.4/x64/lib/python3.11/site-packages/kiara_plugin/network_analysis/modules/export.py 
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def export__network_data__as__graphml_file(
    self, value: NetworkData, base_path: str, name: str
):
    """Export network data as graphml file."""

    import networkx as nx

    target_path = os.path.join(base_path, f"{name}.graphml")

    # TODO: can't just assume digraph
    graph: nx.Graph = value.as_networkx_graph(
        nx.DiGraph, incl_node_attributes=True, incl_edge_attributes=True
    )
    nx.write_graphml(graph, target_path)

    return {"files": target_path}
export__network_data__as__gexf_file(value: NetworkData, base_path: str, name: str)

Export network data as gexf file.

Source code in /opt/hostedtoolcache/Python/3.11.4/x64/lib/python3.11/site-packages/kiara_plugin/network_analysis/modules/export.py 
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def export__network_data__as__gexf_file(
    self, value: NetworkData, base_path: str, name: str
):
    """Export network data as gexf file."""

    import networkx as nx

    target_path = os.path.join(base_path, f"{name}.gexf")

    # TODO: can't just assume digraph
    graph: nx.Graph = value.as_networkx_graph(
        nx.DiGraph, incl_node_attributes=True, incl_edge_attributes=True
    )
    nx.write_gexf(graph, target_path)

    return {"files": target_path}
export__network_data__as__adjlist_file(value: NetworkData, base_path: str, name: str)

Export network data as adjacency list file.

Source code in /opt/hostedtoolcache/Python/3.11.4/x64/lib/python3.11/site-packages/kiara_plugin/network_analysis/modules/export.py 
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def export__network_data__as__adjlist_file(
    self, value: NetworkData, base_path: str, name: str
):
    """Export network data as adjacency list file."""

    import networkx as nx

    target_path = os.path.join(base_path, f"{name}.adjlist")

    # TODO: can't just assume digraph
    graph: nx.Graph = value.as_networkx_graph(
        nx.DiGraph, incl_node_attributes=True, incl_edge_attributes=True
    )
    nx.write_adjlist(graph, target_path)

    return {"files": target_path}
export__network_data__as__multiline_adjlist_file(value: NetworkData, base_path: str, name: str)

Export network data as multiline adjacency list file.

Source code in /opt/hostedtoolcache/Python/3.11.4/x64/lib/python3.11/site-packages/kiara_plugin/network_analysis/modules/export.py 
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def export__network_data__as__multiline_adjlist_file(
    self, value: NetworkData, base_path: str, name: str
):
    """Export network data as multiline adjacency list file."""

    import networkx as nx

    target_path = os.path.join(base_path, f"{name}.adjlist_multiline")

    # TODO: can't just assume digraph
    graph: nx.Graph = value.as_networkx_graph(
        nx.DiGraph, incl_node_attributes=True, incl_edge_attributes=True
    )
    nx.write_multiline_adjlist(graph, target_path)

    return {"files": target_path}
export__network_data__as__edgelist_file(value: NetworkData, base_path: str, name: str)

Export network data as edgelist file.

Source code in /opt/hostedtoolcache/Python/3.11.4/x64/lib/python3.11/site-packages/kiara_plugin/network_analysis/modules/export.py 
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def export__network_data__as__edgelist_file(
    self, value: NetworkData, base_path: str, name: str
):
    """Export network data as edgelist file."""

    import networkx as nx

    target_path = os.path.join(base_path, f"{name}.edge_list")

    # TODO: can't just assume digraph
    graph: nx.Graph = value.as_networkx_graph(
        nx.DiGraph, incl_node_attributes=True, incl_edge_attributes=True
    )
    nx.write_edgelist(graph, target_path)

    return {"files": target_path}
export__network_data__as__network_text_file(value: NetworkData, base_path: str, name: str)

Export network data as network text file (with a '.network' extension).

Source code in /opt/hostedtoolcache/Python/3.11.4/x64/lib/python3.11/site-packages/kiara_plugin/network_analysis/modules/export.py 
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def export__network_data__as__network_text_file(
    self, value: NetworkData, base_path: str, name: str
):
    """Export network data as network text file (with a '.network' extension)."""

    import networkx as nx

    target_path = os.path.join(base_path, f"{name}.network")

    # TODO: can't just assume digraph
    graph: nx.Graph = value.as_networkx_graph(
        nx.DiGraph, incl_node_attributes=True, incl_edge_attributes=True
    )
    nx.write_network_text(graph, target_path)

    return {"files": target_path}